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Tyler O'Neal, Staff Editor ACADEMIA May 17, 2021, 9:00 am

Tohoku researchers develop a numerical method that paves the way for simulating landslide tsunamis

Landslides occurring on land or underneath the sea - known as subaerial and submarine landslides respectively - can cause devastating tsunamis. They also pose other hazards such as severing submarine cables and pipelines.

Yet the mechanisms at play behind these landslides are less well understood, partly due to the multifaceted interactions taking place: a collapse of the seabed and/or the interaction between soil and water. Conventional approaches make it difficult to predict the behaviors of soil and seawater with high accuracy.

The researchers' breakthrough proposes a new hybrid simulation method that can express the complex interaction between soil structures - referred to as granular masses - and liquids.

"Our novel method couples together two computational methods that analyze the interactions of solids and liquids: the finite element method (FEM) along with the material point method (MEM)," said Kenjiro Terada, professor at Tohoku University's International Research Institute of Disaster Science and co-author of the study.

Simulated wave propagation, mimicking tsunami, induced by underwater granular collapse: deposited granular mass and water surface profile ⒸKenjiro Terada

Using the newly created algorithm, the researchers were able to simulate a wave mimicking a submarine granular collapse and a wave induced by a subaerial slide over an inclined plane. To their delight, the simulations were in reasonable agreement with the numerical measurements.

Several numerical examples also revealed that the proposed method can be applied to other types of potentially dangerous natural events that involve the interaction of air, water, and solids.

Looking ahead, Terada and his team aim to improve the accuracy of their experimental measurements and apply it to larger-scale real data.

Australian scientists rewrite the genesis of mosquito-borne viruses

Tyler O'Neal, Staff Editor ACADEMIA May 14, 2021, 12:00 pm

Better designed vaccines for insect-spread viruses like dengue and Zika are likely after researchers discovered models of immature flavivirus particles were originally misinterpreted.

Researchers from The University of Queensland and Monash University have now determined the first complete 3D molecular structure of the immature flavivirus, revealing an unexpected organization.

UQ researcher Associate Professor Daniel Watterson said the team was studying the insect-specific Binjari virus when they made the discovery.

"We were using Australia's safe-to-handle Binjari virus, which we combine with more dangerous viral genes to make safer and more effective vaccines," Dr. Watterson said. Cryo-electron microscopy reconstruction of Binjari virus. The projecting spikes are a typical feature of immature flaviviruses such as dengue virus but reveal an unexpected organization.  CREDIT Associate Professor Fasseli Coulibaly

"But when analyzing Binjari we could clearly see that the molecular structure we've all been working from since 2008 wasn't quite correct.

"Imagine trying to build a house when your blueprints are wrong - that's exactly what it's like when you're attempting to build effective vaccines and treatments and your molecular 'map' is not quite right."

The team used a technique known as cryogenic electron microscopy to image the virus, generating high-resolution data from Monash's Ramaciotti Centre for Cryo-Electron Microscopy facility.

With thousands of collected two-dimensional images of the virus, the researchers then combined them using a high-performance computing platform called 'MASSIVE' to construct a high-resolution 3D structure.

Monash's Associate Professor Fasséli Coulibaly, a co-leader of the study, said the revelation could lead to new and better vaccines for flaviviruses, which have a huge disease burden globally.

"Flaviviruses are globally distributed and the dengue virus alone infects around 400 million people annually," Dr. Coulibaly said.

"They cause a spectrum of potentially severe diseases including hepatitis, vascular shock syndrome, encephalitis, acute flaccid paralysis, congenital abnormalities, and fetal death.

"This structure defines the exact wiring of the immature virus before it becomes infectious, and we now have a better understanding of the levers and pulleys involved in viral assembly.

"This is a continuation of fundamental research by us and others and, without this hard-won basic knowledge, we wouldn't have the solid foundation needed to design tomorrow's treatments."

Peking University Professor Zhang Pingwen honored as SIAM Fellow

Tyler O'Neal, Staff Editor ACADEMIA April 3, 2020, 1:13 pm

On March 31, Society for Industrial and Applied Mathematics (SIAM) announced the 2020 Class of SIAM Fellows. These distinguished members were nominated for their exemplary research as well as outstanding service to the community. Through their contributions, SIAM Fellows help advance the fields of applied mathematics and computational science. Professor Zhang Pingwen from the School of Mathematical Sciences, Peking University is inducted for his contributions in complex fluids modeling, multiscale analysis, and adaptive grid supercomputation. Professor Zhang is the only member to be elected this year among all faculty members from universities on the Chinese mainland.

Zhang Pingwen, vice president of Peking University and professor of the School of Mathematical Sciences, has published more than 100 papers in journals like JAMS, SINUM and PRL. His research interests include modeling and simulation of soft matter (complex fluids), applied analysis and numerical analysis, moving mesh methods and applications. Professor Zhang Pingwen from Peking University{module INSIDE STORY}

SIAM was incorporated in 1952 as a nonprofit organization to convey useful mathematical knowledge to other professionals who could implement mathematical theory for practical, industrial, or scientific use.

  1. Swiss university deploys virtual screening for active substances against the coronavirus
  2. University of Arizona professor Gregory Ditzler Wins NSF CAREER Award

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